ICBO 2021 video presentations

The International Conference on Biomedical Ontologies (ICBO) is a premier annual conference series that brings together researchers, students and professionals involved in the development and application of ontologies in all areas of biology, medicine, diseases, human health, genome biology, environment, biomes, nutrition, food, plants, agriculture and others.

ICBO 2021 was part of the Bolzano Summer of Knowledge 2021.

INVITED TALKS

CONTRIBUTED TALKS

36 videos found
A community effort for COVID-19 Ontology Harmonization - Asiyah Lin
04:59
A community effort for COVID-19 Ontology Harmonization – Asiyah Lin
A semantic model leveraging pattern-based ontology terms to bridge environmental exposures and health outcomes - Lauren E. Chan
07:33
A semantic model leveraging pattern-based ontology terms to bridge environmental exposures and health outcomes – Lauren E. Chan
An ontological analysis of health procedure information - Paul Fabry
08:28
An ontological analysis of health procedure information – Paul Fabry
Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology - Daniel Lyman
05:04
Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology – Daniel Lyman
Assessing the consistency of modeling in complex ontologies: A study of the musculoskeletal system of the Foundational Model of Anatomy - Melissa Clarkson
16:02
Assessing the consistency of modeling in complex ontologies: A study of the musculoskeletal system of the Foundational Model of Anatomy – Melissa Clarkson
Bringing Schemas to the Schemaless - Mark Miller
04:22
Bringing Schemas to the Schemaless – Mark Miller
Challenges Arising from Ontology Imports Utilized for Exploring Mechanisms of Disease - Lynn Schriml
02:55
Challenges Arising from Ontology Imports Utilized for Exploring Mechanisms of Disease – Lynn Schriml
Challenges in Realism-Based Ontology Design: a Case Study on Creating an Ontology for Motivational Learning Theories - Irshad Ally
9:51
Challenges in Realism-Based Ontology Design: a Case Study on Creating an Ontology for Motivational Learning Theories – Irshad Ally
Challenges in Realism-Based Ontology Design: a Case Study on Creating an Ontology for Motivational Learning Theories - Irshad Ally
06:47
Challenges in Realism-Based Ontology Design: a Case Study on Creating an Ontology for Motivational Learning Theories – Irshad Ally
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature - Anthony Huffman
15:05
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature – Anthony Huffman
CIDS: An Ontology for Representing Social and Environmental Impact - Mark Fox and Kate Ruf
25:33
CIDS: An Ontology for Representing Social and Environmental Impact – Mark Fox and Kate Ruf
Dairy Ontology to Support Precision Farming - Victor Fuentes
12:42
Dairy Ontology to Support Precision Farming – Victor Fuentes
Expanding the Mammalian Phenotype Ontology to Meet the Needs of COVID-19 Model Curation - Susan Bello
03:59
Expanding the Mammalian Phenotype Ontology to Meet the Needs of COVID-19 Model Curation – Susan Bello
Foundations for an Ontology of Nudges - Adrien Barton
19:54
Foundations for an Ontology of Nudges – Adrien Barton
GNOme – Glycan Naming and Subsumption Ontology - Nathan Edwards
04:09
GNOme – Glycan Naming and Subsumption Ontology – Nathan Edwards
Horned-OWL: Building ontologies at Big Data Scale - Phillip Lord
03:45
Horned-OWL: Building ontologies at Big Data Scale – Phillip Lord
Identification and ontology term enrichment analysis of genes associated with COVID-19 and acute kidney disease - Suyuan Peng
03:59
Identification and ontology term enrichment analysis of genes associated with COVID-19 and acute kidney disease – Suyuan Peng
IFOW 2021 - Agricultural Applications
1:37:59
IFOW 2021 – Agricultural Applications
IFOW 2021 - Diet and Nutrition Ontology
1:42:01
IFOW 2021 – Diet and Nutrition Ontology
IFOW 2021 - Food Monitoring and Production Applications
1:07:46
IFOW 2021 – Food Monitoring and Production Applications
KG-Microbe: a reference knowledge-graph and platform for harmonized microbial information - Marcin P. Joachimiak
04:09
KG-Microbe: a reference knowledge-graph and platform for harmonized microbial information – Marcin P. Joachimiak
Leveraging Ontologies within the National Microbiome Data Collaborative - William D. Duncan
05:13
Leveraging Ontologies within the National Microbiome Data Collaborative – William D. Duncan
Linking common human diseases to their phenotypes; development of a resource for human phenomics - Paul N Schofield
25:18
Linking common human diseases to their phenotypes; development of a resource for human phenomics – Paul N Schofield
LUMC Clinical Ontology for Biomedical Research - Núria Queralt Rosinach
07:07
LUMC Clinical Ontology for Biomedical Research – Núria Queralt Rosinach
Managing Incompleteness and Validating the Content of Nutritional Food Sources using FoodOn as Pivot Ontology - Patrice Buche
03:41
Managing Incompleteness and Validating the Content of Nutritional Food Sources using FoodOn as Pivot Ontology – Patrice Buche
Modeling Logical Definitions in Biomedical Ontologies by Reusing Ontology Design Patterns - Mirna El Ghosh
06:53
Modeling Logical Definitions in Biomedical Ontologies by Reusing Ontology Design Patterns – Mirna El Ghosh
OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies - Nicolas Matentzoglu
05:23
OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies – Nicolas Matentzoglu
Ontology modeling and analysis of COVID-19-associated Acute Kidney Injury and its underlying molecular mechanisms - Easheta Shah
04:16
Ontology modeling and analysis of COVID-19-associated Acute Kidney Injury and its underlying molecular mechanisms – Easheta Shah
Ontology-based modeling, representation, and analysis of biomarkers in healthy and disease kidney tissue - Yingtong Liu
06:17
Ontology-based modeling, representation, and analysis of biomarkers in healthy and disease kidney tissue – Yingtong Liu
Recent Refinements of the NeuroPsychological Testing Ontology - Alexander P. Cox
06:00
Recent Refinements of the NeuroPsychological Testing Ontology – Alexander P. Cox
Reclassification of Infectious Disease in the Mondo Disease Ontology - Nicole Vasilevsky
05:08
Reclassification of Infectious Disease in the Mondo Disease Ontology – Nicole Vasilevsky
Representing Gender in Ontologies: A Dispositional Perspective - Fumiaki Toyoshima
15:19
Representing Gender in Ontologies: A Dispositional Perspective – Fumiaki Toyoshima
Specifying Behavioural Outcomes - Robert West
14:45
Specifying Behavioural Outcomes – Robert West
The Bioregistry: a Metaregistry for Biomedical Entities - Charles Tapley Hoyt
04:32
The Bioregistry: a Metaregistry for Biomedical Entities – Charles Tapley Hoyt
The Need for Ontologies for Systematic Reviews: Case Study in Flavoured Tobacco Use - Caitlin Notley
26:22
The Need for Ontologies for Systematic Reviews: Case Study in Flavoured Tobacco Use – Caitlin Notley
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences - Emma Norris
20:14
Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences – Emma Norris